May 2-3 : Future developers meeting (2-day workshop)
Description
This workshop brings together developers (and aspiring developers) of R- and Python-based tools for mass spectrometry and proteomics. The program will include presentations by leading developers of tools, who will provide insight into the software design that ensures reproducible and reusable research, and presentations by the participants.
We invite everyone to submit abstracts describing tools for mass spectrometry and proteomics developed in the R or Python ecosystems. The abstracts should focus less on the specific functionality, and more on the design of the tool, and its strategy for enabling reproducible research, sustainability, and inter-operability with other computational tools.
A subset of the abstracts will be selected for oral or poster presentations. Accepted presenters will receive a free admission to this part of the program.
Target audience
- Anyone interested in developing R- or Python-based tools for mass spectrometry and proteomics.
Speakers
- Kylie Bemis, Laurent Gatto
Tentative schedule
Saturday, May 2, 2020
- 8:00 a.m. Registration
- 9 a.m. Tutorial: design of the R for Mass Spectrometry project. Laurent Gatto
- 10:30 a.m. Refreshments
- 11:00 a.m. Tutorial: design of the R for Mass Spectrometry project. Laurent Gatto
- 12:30 p.m. Lunch on your own
- 1:30 p.m. Participants presentations (15min per participant)
- 3:00 p.m. Refreshments
- 3:30 p.m. Keynote: Design of OpenMS. Oliver Kohlbacher
- 4:15 p.m – until interest. Poster session and social event.
Sunday, May 3, 2020
- 8:00 a.m. Informal Q&A
- 9 a.m. Tutorial: design of Cardinal and Matter, tools for larger-than-memory MS imaging experiments. Kylie Bemis
- 10:30 a.m. Refreshments
- 11:00 a.m. Tutorial: design of Cardinal and Matter, tools for larger-than-memory MS imaging experiments. Kylie Bemis
- 12:30 p.m. Lunch on your own
- 1:30 p.m. Participants presentations (15min per participant)
- 3:00 p.m. Refreshments
- 3:30 p.m. Panel discussion
- 5:00 p.m. Adjourn