May Institute goes ONLINE!
Computation and statistics for mass spectrometry and proteomics
May 3 – May 14, 2021, Northeastern University, Boston MA via Zoom
Organizer: Olga Vitek
The 2021 instance of the Institute is happening online! It includes keynotes from young investigators, tutorials and hands-on by tool authors, and contributed talks by current and aspiring developers of computational methods. Together we will take an in-depth look into case studies of design and analysis of mass spectrometry-based experiments.
Zoom links will be provided to registered participants the day before each event. Youtube video recordings will be shared with registered participants after each event. We look forward to the meeting.
Week 1:
All times are in Eastern time zone
| May 3, 2021
11:00am-12:30pm 12:45pm-2:15pm |
Keynote, Brian Searle: Introduction to DIA Tutorial, Lindsay Pino: Introduction to DIA proteomics with Skyline |
Video Video |
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| May 4, 2021
11:00am-2:15pm |
Hands-on, Brendan MacLean: Part 1: Skyline processing of proteome-wide DIA of a controlled mixture |
Video |
|
| May 5, 2021
11:00am-2:15pm |
Hands-on, Brendan MacLean: Part 2: Skyline-based comparison of refined versus proteome-wide queries of DIA experiments |
Video |
|
| May 6, 2021
11:00am-12:30pm 12:45pm-2:15pm |
Keynote, Lindsay Pino: Beyond abundance: dynamic quantitative proteomics using Skyline Keynote, Isabell Bludau: Expanding the scope of DIA analyses to protein complexes and proteoforms |
|
Video
Video |
| May 7, 2021
11:00am-2:15pm |
Hands-on, Ryan Benz: Part 1: Introduction to R for beginners |
Video |
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| May 8, 2021
11:00am-2:15pm |
Hands-on, Ryan Benz: Part 2: Introduction to R for beginners |
Video |
Week 2:
All times are in Eastern time zone
| May 10, 2021
11:00am-2:15pm |
Tutorial, Kylie Bemis: Intermediate R crash course for MS practitioners |
Video |
|
| May 11, 2021
11:00am-12:30pm 12:45pm-2:15pm |
Tutorial, Olga Vitek: Introduction to statistical methods and MSstats Hands-on, Meena Choi and Brendan MacLean: Analysis of data in Skyline Part 1 and Part 2 in MSstats, and comparison of the results |
|
Video
Video |
| May 12, 2021
11:00am-12:30pm 12:45pm-2:15pm |
Tutorial, Mateusz Staniak and Olga Vitek: Introduction to MSstats ecosystem and MSstatsTMT Hands-on, Ting Huang and Mateusz Staniak: Use cases of MSstatsTMT |
|
Video
Video |
| May 13, 2021
11:00am-12:30pm 12:45pm-2:15pm |
Keynote. Laurent Gatto: Reproducible MS-based research Tutorial, Nuno Bandeira and Meena Choi. Reproducible reporting and reanalysis of quantitative experiments with MassIVE.quant |
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Video
Video |
| May 14, 2021
11:00am-12:00pm 12:15pm-2:15pm |
Future developers meeting: contributed talks Keynote. Alexey Nesvizhskii: Quantification workflows in FragPipe computational pipeline |
Video Video |
This program is supported by the 1R25EB023929-01 award from the National Institutes of Health, by the Chan Zuckerberg Initiative. It is co-sponsored by the Boston Chapter of the American Statistical Association.
Featured Speakers
Clockwise: Brendan MacLean, Brian Searle, Lindsay Pino, Isabell Bludau
