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May Institute continues IN PERSON!
Computation and statistics for mass spectrometry and proteomics

April 29 – May 10, 2024, Northeastern University, Boston MA in person

Organizer: Olga Vitek

The 2023 instance of the Institute is returning in person! It includes keynotes, tutorials and hands-on by proteomics experts and authors of methods and computational tools. Together we will take an in-depth look into case studies of design and analysis of quantitative mass spectrometry-based experiments. At the end of each day the speakers will stay online for additional exercises and Q&A if there is interest.

 

Week 1:

All times are in Eastern time zone.

At the end of each day the speakers will stay online for additional exercises and Q&A if there is interest

May 9, 2022

11:00am-12:30pm

 

12:45pm-2:15pm

 

Intro and hands-on, Sue Abbatiello: targeted MS-based proteomics with Skyline

Intro and hands-on, Lindsay Pino: Data Independent Acquisition and data analysis with Skyline

 

Docs

 

Docs

 

Video

 

Video

May 10, 2022

11:00am-2:15pm

 

Hands-on, Brendan MacLean: Part 1:  Skyline processing of proteome-wide DIA of a controlled mixture

 

Docs

 

Video

May 11, 2022

11:00am-2:15pm

 

Hands-on, Brendan MacLean: Part 2: Skyline-based comparison of refined versus proteome-wide queries of DIA experiments

 

Docs

 

Video

May 12, 2022

11:00am-12:30pm

 

12:45pm-2:15pm

 

Keynote, Alexey Nesvizhskii: Quantification workflows in FragPipe computational pipeline

Hands-on, Felipe Leprevost &Fengchao Yu: Quantification workflows in FragPipe computational pipeline

 

Docs

 

Docs

 

Video

 

Video

May 13, 2022

11:00am-2:15pm

 

Hands-on, Ryan Benz: Part 1: Introduction to R for beginners

 

Docs

 

Video

May 14, 2022

11:00am-2:15pm

 

Hands-on, Ryan Benz: Part 2: Introduction to R for beginners

 

Docs

 

Video

 

Week 2:

All times are in Eastern time zone.

At the end of each day the speakers will stay online for additional exercises and Q&A if there is interest

May 16, 2022

11:00am-2:15pm

 

Tutorial, Kylie Bemis: Intermediate R crash course for MS practitioners

 

Docs

 

Video

May 17, 2022

11:00am-12:30pm

 

12:45pm-2:15pm

 

Tutorial, Olga Vitek: Introduction to statistical methods and MSstats for label-free proteomics

Hands-on, Meena Choi and Brendan MacLean: Analysis of data in Skyline Part 1 and Part 2 in MSstats, and comparison of the results

 

Docs

 

Docs

 

Video

 

Video

May 18, 2022

11:00am-12:30pm

 

12:45pm-2:15pm

 

Tutorial, Olga Vitek: Introduction to statistical methods and MSstatsTMT for label-based proteomics.

Hands-on, Ting Huang: Analysis of data in the FragPipe tutorial with MSstatsTMT.

 

Docs

 

Docs

 

Video

 

Video

May 19, 2022

11:00am-11:45pm

 

11:45pm-12:30pm

 

12:45pm-1:30pm

 

1:30pm-2:15pm

 

Tutorial, Nuno Bandeira: Reproducible quantitative MS-based proteomics with MassIVE

Tutorial, Meena Choi: Reproducible quantitative MS-based proteomics with MassIVE.quant

Tutorial, Yasset Perez-Riverol: Reproducible quantitative MS-based proteomics with PRIDE

Tutorial, Vagisha Sharma: Introduction to Panorama and Panorama Public

 

Docs

 

Docs

 

Docs

 

Docs

 

Video

 

Video

 

Video

 

Video

May 20, 2022

11:00am-2:15pm

 

Hands-on, Charles Tapley Hoyt: Modern software development practice with Python

 

Docs

 

Video

This program is supported by the 1R25EB023929-01 award from the National Institutes of Health, by the Chan Zuckerberg Initiative. It is co-sponsored by the Boston Chapter of the American Statistical Association.

 

Featured Speakers