May Institute goes ONLINE!
Computation and statistics for mass spectrometry and proteomics
May 3 – May 14, 2021, Northeastern University, Boston MA via Zoom
Organizer: Olga Vitek
The 2021 instance of the Institute is happening online! It includes keynotes from young investigators, tutorials and hands-on by tool authors, and contributed talks by current and aspiring developers of computational methods. Together we will take an in-depth look into case studies of design and analysis of mass spectrometry-based experiments.
Please watch this space for program updates. Registration will open in the second half of February 2021. We look forward to the meeting.
Week 1:
All times are in Eastern time zone
| May 3, 2021
11:00am-12:30pm 12:45pm-2:15pm |
Keynote, Brian Searle: Introduction to DIA Tutorial, Lindsay Pino: Introduction to DIA proteomics with Skyline |
Docs Docs |
Video Video |
| May 4, 2021
11:00am-2:15pm |
Hands-on, Brendan MacLean: Part 1: Skyline processing of proteome-wide DIA of a controlled mixture |
Docs |
Video |
| May 5, 2021
11:00am-2:15pm |
Hands-on, Brendan MacLean: Part 2: Skyline-based comparison of refined versus proteome-wide queries of DIA experiments |
Docs |
Video |
| May 6, 2021
11:00am-12:30pm 12:45pm-2:15pm |
Keynote, Lindsay Pino: Beyond abundance: dynamic quantitative proteomics using Skyline Keynote, Isabell Bludau: Expanding the scope of DIA analyses to protein complexes and proteoforms |
Docs
Docs |
Video
Video |
| May 7, 2021
11:00am-2:15pm |
Hands-on, Ryan Benz: Part 1: Introduction to R for beginners |
Docs |
Video |
| May 8, 2021
11:00am-2:15pm |
Hands-on, Ryan Benz: Part 2: Introduction to R for beginners |
Docs |
Video |
Week 2:
All times are in Eastern time zone
| May 10, 2021
11:00am-2:15pm |
Tutorial, Kylie Bemis: Intermediate R crash course for MS practitioners |
Docs |
Video |
| May 11, 2021
11:00am-12:30pm 12:45pm-2:15pm |
Tutorial, Olga Vitek: Introduction to statistical methods and MSstats Hands-on, Meena Choi and Brendan MacLean: Analysis of data in Skyline Part 1 and Part 2 in MSstats, and comparison of the results |
Docs
Docs |
Video
Video |
| May 12, 2021
11:00am-12:30pm 12:45pm-2:15pm |
Tutorial, Mateusz Staniak and Olga Vitek: Introduction to MSstats ecosystem and MSstatsTMT Hands-on, Ting Huang and Mateusz Staniak: Use cases of MSstatsTMT |
Docs
Docs |
Video
Video |
| May 13, 2021
11:00am-12:30pm 12:45pm-2:15pm |
Keynote. Laurent Gatto: Reproducible MS-based research Tutorial, Nuno Bandeira and Meena Choi. Reproducible reporting and reanalysis of quantitative experiments with MassIVE.quant |
Docs
Docs |
Video
Video |
| May 14, 2021
11:00am-2:15pm |
Future developers meeting: contributed talks |
Docs |
Video |
This program is supported by the 1R25EB023929-01 award from the National Institutes of Health, by the Chan Zuckerberg Initiative. It is co-sponsored by the Boston Chapter of the American Statistical Association.
Featured Speakers
Clockwise: Brendan MacLean, Brian Searle, Lindsay Pino, Isabell Bludau
