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May Institute goes ONLINE!
Computation and statistics for mass spectrometry and proteomics

May 3 – May 14, 2021, Northeastern University, Boston MA via Zoom

Organizer: Olga Vitek

The 2021 instance of the Institute is happening online! It includes keynotes from young investigators, tutorials and hands-on by tool authors, and contributed talks by current and aspiring developers of computational methods. Together we will take an in-depth look into case studies of design and analysis of mass spectrometry-based experiments.

Zoom links will be provided to registered participants the day before each event. Youtube video recordings will be shared with registered participants after each event. We look forward to the meeting.

 

Week 1:

All times are in Eastern time zone

May 3, 2021

11:00am-12:30pm

12:45pm-2:15pm

 

Keynote, Brian Searle: Introduction to DIA

Tutorial, Lindsay Pino: Introduction to DIA proteomics with Skyline

 

Docs

Docs

 

Video

Video

May 4, 2021

11:00am-2:15pm

 

Hands-on, Brendan MacLean: Part 1:  Skyline processing of proteome-wide DIA of a controlled mixture

 

Docs

 

Video

May 5, 2021

11:00am-2:15pm

 

Hands-on, Brendan MacLean: Part 2: Skyline-based comparison of refined versus proteome-wide queries of DIA experiments

 

Docs

 

Video

May 6, 2021

11:00am-12:30pm

12:45pm-2:15pm

 

Keynote, Lindsay Pino: Beyond abundance: dynamic quantitative proteomics using Skyline

Keynote, Isabell Bludau: Expanding the scope of DIA analyses to protein complexes and proteoforms

 

Docs

 

Docs

 

Video

 

Video

May 7, 2021

11:00am-2:15pm

 

Hands-on, Ryan Benz: Part 1: Introduction to R for beginners

 

Docs

 

Video

May 8, 2021

11:00am-2:15pm

 

Hands-on, Ryan Benz: Part 2: Introduction to R for beginners

 

Docs

 

Video

 

Week 2:

All times are in Eastern time zone

May 10, 2021

11:00am-2:15pm

 

Tutorial, Kylie Bemis: Intermediate R crash course for MS practitioners

 

Docs

 

Video

May 11, 2021

11:00am-12:30pm

12:45pm-2:15pm

 

Tutorial, Olga Vitek: Introduction to statistical methods and MSstats

Hands-on, Meena Choi and Brendan MacLean: Analysis of data in Skyline Part 1 and Part 2 in MSstats, and comparison of the results

 

Docs

 

Docs

 

Video

 

Video

May 12, 2021

11:00am-12:30pm

12:45pm-2:15pm

 

Tutorial, Mateusz Staniak and Olga Vitek: Introduction to MSstats ecosystem and MSstatsTMT

Hands-on, Ting Huang and Mateusz Staniak: Use cases of MSstatsTMT

 

Docs

 

Docs

 

Video

 

Video

May 13, 2021

11:00am-12:30pm

12:45pm-2:15pm

 

Keynote. Laurent Gatto: Reproducible MS-based research

Tutorial, Nuno Bandeira and Meena Choi. Reproducible reporting and reanalysis of quantitative experiments with MassIVE.quant

 

Docs

 

Docs

 

Video

 

Video

May 14, 2021

11:00am-12:00pm

12:15pm-2:15pm

 

Future developers meeting: contributed talks

Keynote. Alexey Nesvizhskii: Quantification workflows in FragPipe computational pipeline

 

Docs

Docs

 

Video

Video

This program is supported by the 1R25EB023929-01 award from the National Institutes of Health, by the Chan Zuckerberg Initiative. It is co-sponsored by the Boston Chapter of the American Statistical Association.

 

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