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May Institute goes ONLINE!
Computation and statistics for mass spectrometry and proteomics

May 3 – May 14, 2021, Northeastern University, Boston MA via Zoom

Organizer: Olga Vitek

The 2021 instance of the Institute is happening online! It includes keynotes from young investigators, tutorials and hands-on by tool authors, and contributed talks by current and aspiring developers of computational methods. Together we will take an in-depth look into case studies of design and analysis of mass spectrometry-based experiments.

Please watch this space for program updates. Registration will open in the second half of February 2021. We look forward to the meeting.

 

Week 1:

All times are in Eastern time zone

May 3, 2021

11:00am-12:30pm

12:45pm-2:15pm

 

Keynote, Brian Searle: Introduction to DIA

Tutorial, Lindsay Pino: Introduction to DIA proteomics with Skyline

 

Docs

Docs

 

Video

Video

May 4, 2021

11:00am-2:15pm

 

Hands-on, Brendan MacLean: Part 1:  Skyline processing of proteome-wide DIA of a controlled mixture

 

Docs

 

Video

May 5, 2021

11:00am-2:15pm

 

Hands-on, Brendan MacLean: Part 2: Skyline-based comparison of refined versus proteome-wide queries of DIA experiments

 

Docs

 

Video

May 6, 2021

11:00am-12:30pm

12:45pm-2:15pm

 

Keynote, Lindsay Pino: Beyond abundance: dynamic quantitative proteomics using Skyline

Keynote, Isabell Bludau: Expanding the scope of DIA analyses to protein complexes and proteoforms

 

Docs

 

Docs

 

Video

 

Video

May 7, 2021

11:00am-2:15pm

 

Hands-on, Ryan Benz: Part 1: Introduction to R for beginners

 

Docs

 

Video

May 8, 2021

11:00am-2:15pm

 

Hands-on, Ryan Benz: Part 2: Introduction to R for beginners

 

Docs

 

Video

 

Week 2:

All times are in Eastern time zone

May 10, 2021

11:00am-2:15pm

 

Tutorial, Kylie Bemis: Intermediate R crash course for MS practitioners

 

Docs

 

Video

May 11, 2021

11:00am-12:30pm

12:45pm-2:15pm

 

Tutorial, Olga Vitek: Introduction to statistical methods and MSstats

Hands-on, Meena Choi and Brendan MacLean: Analysis of data in Skyline Part 1 and Part 2 in MSstats, and comparison of the results

 

Docs

 

Docs

 

Video

 

Video

May 12, 2021

11:00am-12:30pm

12:45pm-2:15pm

 

Tutorial, Mateusz Staniak and Olga Vitek: Introduction to MSstats ecosystem and MSstatsTMT

Hands-on, Ting Huang and Mateusz Staniak: Use cases of MSstatsTMT

 

Docs

 

Docs

 

Video

 

Video

May 13, 2021

11:00am-12:30pm

12:45pm-2:15pm

 

Keynote. Laurent Gatto: Reproducible MS-based research

Tutorial, Nuno Bandeira and Meena Choi. Reproducible reporting and reanalysis of quantitative experiments with MassIVE.quant

 

Docs

 

Docs

 

Video

 

Video

May 14, 2021

11:00am-2:15pm

 

Future developers meeting: contributed talks

 

Docs

 

Video

This program is supported by the 1R25EB023929-01 award from the National Institutes of Health, by the Chan Zuckerberg Initiative. It is co-sponsored by the Boston Chapter of the American Statistical Association.

 

Featured Speakers