May Institute continues IN PERSON!
Computation and statistics for mass spectrometry and proteomics
April 29 – May 10, 2024, Northeastern University, Boston MA in person
Organizer: Olga Vitek
The 2023 instance of the Institute is returning in person! It includes keynotes, tutorials and hands-on by proteomics experts and authors of methods and computational tools. Together we will take an in-depth look into case studies of design and analysis of quantitative mass spectrometry-based experiments. At the end of each day the speakers will stay online for additional exercises and Q&A if there is interest.
Week 1:
All times are in Eastern time zone.
At the end of each day the speakers will stay online for additional exercises and Q&A if there is interest
| May 9, 2022
11:00am-12:30pm
12:45pm-2:15pm |
Intro and hands-on, Sue Abbatiello: targeted MS-based proteomics with Skyline Intro and hands-on, Lindsay Pino: Data Independent Acquisition and data analysis with Skyline |
|
Video
Video |
| May 10, 2022
11:00am-2:15pm |
Hands-on, Brendan MacLean: Part 1: Skyline processing of proteome-wide DIA of a controlled mixture |
Video |
|
| May 11, 2022
11:00am-2:15pm |
Hands-on, Brendan MacLean: Part 2: Skyline-based comparison of refined versus proteome-wide queries of DIA experiments |
Video |
|
| May 12, 2022
11:00am-12:30pm
12:45pm-2:15pm |
Keynote, Alexey Nesvizhskii: Quantification workflows in FragPipe computational pipeline Hands-on, Felipe Leprevost &Fengchao Yu: Quantification workflows in FragPipe computational pipeline |
|
Video
Video |
| May 13, 2022
11:00am-2:15pm |
Hands-on, Ryan Benz: Part 1: Introduction to R for beginners |
Video |
|
| May 14, 2022
11:00am-2:15pm |
Hands-on, Ryan Benz: Part 2: Introduction to R for beginners |
Video |
Week 2:
All times are in Eastern time zone.
At the end of each day the speakers will stay online for additional exercises and Q&A if there is interest
| May 16, 2022
11:00am-2:15pm |
Tutorial, Kylie Bemis: Intermediate R crash course for MS practitioners |
Video |
|
| May 17, 2022
11:00am-12:30pm
12:45pm-2:15pm |
Tutorial, Olga Vitek: Introduction to statistical methods and MSstats for label-free proteomics Hands-on, Meena Choi and Brendan MacLean: Analysis of data in Skyline Part 1 and Part 2 in MSstats, and comparison of the results |
|
Video
Video |
| May 18, 2022
11:00am-12:30pm
12:45pm-2:15pm |
Tutorial, Olga Vitek: Introduction to statistical methods and MSstatsTMT for label-based proteomics. Hands-on, Ting Huang: Analysis of data in the FragPipe tutorial with MSstatsTMT. |
|
Video
Video |
| May 19, 2022
11:00am-11:45pm
11:45pm-12:30pm
12:45pm-1:30pm
1:30pm-2:15pm |
Tutorial, Nuno Bandeira: Reproducible quantitative MS-based proteomics with MassIVE Tutorial, Meena Choi: Reproducible quantitative MS-based proteomics with MassIVE.quant Tutorial, Yasset Perez-Riverol: Reproducible quantitative MS-based proteomics with PRIDE Tutorial, Vagisha Sharma: Introduction to Panorama and Panorama Public |
|
Video
Video
Video
Video |
| May 20, 2022
11:00am-2:15pm |
Hands-on, Charles Tapley Hoyt: Modern software development practice with Python |
Video |
This program is supported by the 1R25EB023929-01 award from the National Institutes of Health, by the Chan Zuckerberg Initiative. It is co-sponsored by the Boston Chapter of the American Statistical Association.
Featured Speakers
Clockwise: Susan Abbatiello, Brendan MacLean, Lindsay K. Pino
